We examine the soft supersymmetry breaking parameters in supersymmetric theories on a slice of AdS(5) which generate the hierarchical Yukawa couplings by dynamically quasi-localizing the bulk matter fields in an extra dimension. Such models can be regarded as the AdS dual of the recently studied 4-dimensional models which contain a supersymmetric CFT to generate the hierarchical Yukawa couplings. In such models, if supersymmetry breaking is mediated by the bulk radion superfield and/or some brane chiral superfields, potentially dangerous flavor-violating soft parameters are suppressed with an appropriate correlation with the Yukawa coupling suppression, thereby avoiding the SUSY flavor problem in a natural manner. We present some models of radion-dominated supersymmetry breaking which yield a highly predictive form of soft parameters in this framework, and discuss the constraints from flavor-changing rare processes. Most of the discussions in this paper can be applied also to models with a flat extra dimension in which the Yukawa hierarchy is generated by quasi-localizing the bulk matter fields in the extra dimension.