Browse "BiS-Journal Papers(저널논문)" by Subject GENE-EXPRESSION
Showing results 1 to 60 of 61
A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network Hong, Chang-Ki; Lee, Min-Ho; Kim, Dong-Sup; Kim, Dong-San; Cho, Kwang-Hyun; Shin, In-Sik, BMC SYSTEMS BIOLOGY, v.6, 2012-09 |
| A design principle underlying the synchronization of oscillations in cellular systems Kim, Jeong-Rae; Shin, Dongkwan; Jung, Sung Hoon; Heslop-Harrison, Pat; Cho, Kwang-Hyun, JOURNAL OF CELL SCIENCE, v.123, no.4, pp.537 - 543, 2010-02 |
| A hidden incoherent switch regulates RCAN1 in the calcineurin-NFAT signaling network Shin, Sung-Young; Yang, Hee-Won; Kim, Jeong-Rae; Heo, Won-Do; Cho, Kwang-Hyun, JOURNAL OF CELL SCIENCE (Featured Cover Article 선정. 조선일보, 한국경제 등 10개 일간지에 보도됨.), v.124, no.1, pp.82 - 90, 2011-01 |
| A long-range interactive DNA methylation marker panel for the promoters of HOXA9 and HOXA10 predicts survival in breast cancer patients Park, Seong-Min; Choi, Eun-Young; Bae, Mingyun; Choi, Jung Kyoon; Kim, Youn-Jae, CLINICAL EPIGENETICS, v.9, 2017-07 |
| A protein interaction network associated with asthma Hwang, Sohyun; Son, Seung-Woo; Kim, Sang Cheol; Kim, Young Joo; Jeong, Hawoong; Lee, Doheon, JOURNAL OF THEORETICAL BIOLOGY, v.252, no.4, pp.722 - 731, 2008-06 |
| A quantum dot-based microfluidic multi-window platform for quantifying the biomarkers of breast cancer cells Kwon, Seyong; Kim, Minseok S.; Lee, Eun Sook; Sohn, Jang Sihn; Park, Je-Kyun, INTEGRATIVE BIOLOGY, v.6, no.4, pp.430 - 437, 2014-04 |
| BioCAD: an information fusion platform for bio-network inference and analysis Lee, Do-Heon; Kim, Sang-Woo; Kim, Young-Hoon, BMC BIOINFORMATICS, v.8, 2007 |
| Building a drug-target network and its applications Lee, So-Young; Park, Keun-Wan; Kim, Dong-Sup, EXPERT OPINION ON DRUG DISCOVERY, v.4, no.11, pp.1177 - 1189, 2009-11 |
| bZIPDB: A database of regulatory information for human bZIP transcription factors Taewoo Ryu; Juhyun Jung; Sunjae Lee; Ho J Nam; Sun W Hong; Jae W Yoo; Dong-ki Lee; et al, BMC GENOMICS, v.8, pp.271 - 275, 2007-05 |
| Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification Nam, Ho-Jung; Chung, Bong-Chul; Kim, Young-Hoon; Lee, Ki-Young; Lee, Do-Heon, BIOINFORMATICS, v.25, no.23, pp.3151 - 3157, 2009-12 |
| CONVIRT A web-based tool for transcriptional regulatory site identification using a conserved virtual chromosome Ryu, Taewoo; Lee, Sejoon; Hur, Cheol-Goo; Lee, Doheon, BMB REPORTS, v.42, no.12, pp.823 - 828, 2009-12 |
| Convolutional neural network model to predict causal risk factors that share complex regulatory features Lee, Taeyeop; Sung, Min Kyung; Lee, Seulkee; Yang, Woojin; Oh, Jaeho; Kim, Jeong Yeon; Hwang, Seongwon; et al, NUCLEIC ACIDS RESEARCH, v.47, no.22, pp.e146 - e146, 2019-12 |
| Defining cell-type specificity at the transcriptional level in human disease Ju, Wenjun; Greene, Casey S.; Eichinger, Felix; Nair, Viji; Hodgin, Jeffrey B.; Bitzer, Markus; Lee, Young-suk; et al, GENOME RESEARCH, v.23, no.11, pp.1862 - 1873, 2013-11 |
| Differential activation of immune/inflammatory response-related co-expression modules in the hippocampus across the major psychiatric disorders Kim, S.; Hwang, Y.; Webster, M. J.; Lee, Doheon, MOLECULAR PSYCHIATRY, v.21, no.3, pp.376 - 385, 2016-03 |
| Differential regulation of c-Jun N-terminal kinase and NF-kappa B pathway by caffeic acid phenethyl ester in astroglial and monocytic cells Choi, K; Choi, Chulhee, JOURNAL OF NEUROCHEMISTRY, v.105, pp.557 - 564, 2008-04 |
| Disease association and inter-connectivity analysis of human brain specific co-expressed functional modules Oh, Kimin; Hwang, Tae-Ho; Cha, Ki Hoon; Yi, Gwan-Su, BIOLOGICAL RESEARCH, v.48, 2015-12 |
| DNA chip replication for a personalized DNA chip Kim, S; Lim, GS; Lee, SE; Lee, JG; Yun, K; Park, Je-Kyun, BIOMOLECULAR ENGINEERING, v.23, pp.129 - 134, 2006-06 |
| Dynamics of biological systems: role of systems biology in medical research Assmus, Heike E.; Herwig, Rolf; Cho, Kwang-Hyun; Wolkenhauer, Olaf, EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, v.6, no.6, pp.891 - 902, 2006-11 |
| Evolutionary design principles and functional characteristics based on kingdom-specific network motifs Kim, Tae-Hwan; Kim, Junil; Heslop-Harrison, Pat; Cho, Kwang-Hyun, BIOINFORMATICS, v.27, no.2, pp.245 - 251, 2011-01 |
| Flow-lysometry for cytoplasmic analysis of single cells in large populations Lee, Won Chul; Pisano, Albert P.; Cho, Young-Ho; Kuypers, Frans A., MICRO & NANO LETTERS, v.8, no.4, pp.169 - 172, 2013-04 |
| Functional and molecular dissection of HCMV long non-coding RNAs Lee, Sungwon; Kim, Hyewon; Hong, Ari; Song, Jaewon; Lee, Sungyul; Kim, Myeonghwan; Hwang, Sung-yeon; et al, SCIENTIFIC REPORTS, v.12, no.1, 2022-11 |
| Global mapping of the regulatory interactions of histone residues Jung, Inkyung; Seo, Jungmin; Lee, Heun-Sik; Stanton, Lawrence W.; Kim, Dongsup; Choi, Jung Kyoon, FEBS LETTERS, v.589, no.24, pp.4061 - 4070, 2015-12 |
| H3K27 Demethylase JMJD3 Employs the NF-kappa B and BMP Signaling Pathways to Modulate the Tumor Microenvironment and Promote Melanoma Progression and Metastasis Park, Woo Yong; Hong, Beom-Jin; Lee, Jungsul; Choi, Chulhee; Kim, Mi Young, CANCER RESEARCH, v.76, no.1, pp.161 - 170, 2016-01 |
| HBx induces hypomethylation of distal intragenic CpG islands required for active expression of developmental regulators Lee, Sun-Min; Lee, Young-gun; Bae, Jae-Bum; Choi, Jung-Kyoon; Tayama, Chiharu; Hata, Kenichiro; Yun, Yungdae; et al, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v.111, no.26, pp.9555 - 9560, 2014-07 |
| Hyaluronic acid promotes angiogenesis by inducing RHAMM-TGF beta receptor interaction via CD44-PKC delta Park, Deokbum; Kim, Youngmi; Kim, Hyunah; Kim, Kyungjong; Lee, Yun-Sil; Choe, Jongseon; Hahn, Jang-Hee; et al, MOLECULES AND CELLS, v.33, no.6, pp.563 - 574, 2012-06 |
| ICAM-1-induced expression of proinflammatory cytokines in astrocytes: Involvement of extracellular signal-regulated kinase and p38 mitogen-activated protein kinase pathways Lee, SJ; Drabik, K; Van Wagoner, NJ; Lee, S; Choi, Chulhee; Dong, Y; Benveniste, EN, JOURNAL OF IMMUNOLOGY, v.165, no.8, pp.4658 - 4666, 2000-10 |
| Identification of common coexpression modules based on quantitative network comparison Jo, Yousang; Kim, Sanghyeon; Lee, Doheon, BMC BIOINFORMATICS, v.19, 2018-06 |
| Identification of novel trans-crosstalk between histone modifications via genome-wide analysis of maximal deletion effect Jung, Inkyung; Park, Junseong; Choi, Chulhee; Kim, Dongsup, GENES & GENOMICS, v.37, no.8, pp.693 - 701, 2015-08 |
| Identifying molecular targets for reverse aging using integrated network analysis of transcriptomic and epigenomic changes during aging Lee, Hwang-Yeol; Jeon, Yeonsu; Kim, Yeon Kyung; Jang, Jae Young; Cho, Yun Sung; Bhak, Jong; Cho, Kwang-Hyun, SCIENTIFIC REPORTS, v.11, no.1, 2021-06 |
| Identifying the target mRNAs of microRNAs in colorectal cancer Kim, Shinuk; Choi, Minsoo; Cho, Kwang-Hyun, COMPUTATIONAL BIOLOGY AND CHEMISTRY, v.33, no.1, pp.94 - 99, 2009-02 |
| Inferring biomolecular regulatory networks from phase portraits of time-series expression profiles Cho, Kwang-Hyun; Kim, JR; Baek, S; Choi, HS; Choo, SM, FEBS LETTERS, v.580, pp.3511 - 3518, 2006-06 |
| Inferring new drug indications using the complementarity between clinical disease signatures and drug effects Jang, Dongjin; Lee, Sejoon; Lee, Jaehyun; Kim, Kiseong; Lee, Doheon, JOURNAL OF BIOMEDICAL INFORMATICS, v.59, pp.248 - 257, 2016-02 |
| Inferring Pathway Activity toward Precise Disease Classification Lee, Eunjung; Chuang, Han-Yu; Kim, Jong-Won; Ideker, Trey; Lee, Doheon, PLOS COMPUTATIONAL BIOLOGY, v.4, no.11, 2008-11 |
| Least-squares methods for identifying biochemical regulatory networks from noisy measurements Kim, J; Bates, DG; Postlethwaite, I; Heslop-Harrison, P; Cho, Kwang-Hyun, BMC BIOINFORMATICS, v.8, pp.122 - 129, 2007-01 |
| Magnetically guided virus stamping for the targeted infection of single cells or groups of cells Schubert, Rajib; Herzog, Sophie; Trenholm, Stuart; Roska, Botond; Muller, Daniel J., NATURE PROTOCOLS, v.14, no.11, pp.3205 - 3219, 2019-11 |
| Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes Na, Dokyun; Lee, Sunjae; Lee, Doheon, BMC SYSTEMS BIOLOGY, v.4, 2010-05 |
| Meta-analysis method for discovering reliable biomarkers by integrating statistical and biological approaches: An application to liver toxicity Cho, Hye Young; Kim, Hyosil; Na, Dokyun; Kim, So Youn; Jo, Deokyeon; Lee, Doheon, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, v.471, no.2, pp.274 - 281, 2016-03 |
| Multiple roles of the NF-kappa B signaling pathway regulated by coupled negative feedback circuits Kim, Dongsan; Kolch, Walter; Cho, Kwang-Hyun, FASEB JOURNAL, v.23, no.9, pp.2796 - 2802, 2009-09 |
| Network-based classification of breast cancer metastasis Chuang, HY; Lee, E; Liu, YT; Lee, Doheon; Ideker, T, MOLECULAR SYSTEMS BIOLOGY, v.3, pp.1073 - 1083, 2007-10 |
| Nucleosome deposition and DNA methylation at coding region boundaries Choi, Jung Kyoon; Bae, Jae Bum; Lyu, Jaemyun; Kim, Tae Yoon; Kim, Young Joon, GENOME BIOLOGY, v.10, no.9, 2009 |
| Optical induction of muscle contraction at the tissue scale through intrinsic cellular amplifiers Yoon, Jong-Hee; Choi, Myung-Hwan; Ku, Tae-Yun; Choi, Won-Jong; Choi, Chul-Hee, JOURNAL OF BIOPHOTONICS, v.7, no.8, pp.597 - 606, 2014-08 |
| Paeonia lactiflora extract improves the muscle function of mdx mice, an animal model of Duchenne muscular dystrophy, via downregulating the high mobility group box 1 protein Sim, Inae; Jang, Jaewoong; Song, Jaewon; Lee, Jongkyu; Lim, Hyemi; Lee, Hyun Jung; Hwang, Gyusik; et al, JOURNAL OF ETHNOPHARMACOLOGY, v.289, 2022-05 |
| PARP1 enhances lung adenocarcinoma metastasis by novel mechanisms independent of DNA repair Choi, Eun Bee; Yang, Ayeong; Kim, Sun Chang; Lee, Jungsul; Choi, JungKyoon; Choi, Chulhee; Kim, Mi Young, ONCOGENE, v.35, no.35, pp.4569 - 4579, 2016-09 |
| Peroxisome proliferator activated receptor gamma agonists suppress TNF alpha-induced ICAM-1 expression by endothelial cells in a manner potentially dependent on inhibition of reactive oxygen species Jung, Y; Song, S; Choi, Chulhee, IMMUNOLOGY LETTERS, v.117, pp.63 - 69, 2008-04 |
| PKA-activated ApAF-ApC/EBP heterodimer is a key downstream effector of ApCREB and is necessary and sufficient for the consolidation of long-term facilitation Lee, Jin-A; Lee, Sue-Hyun; Lee, Changhoon; Chang, Deok-Jin; Lee, Yong; Kim, Hyoung; Cheang, Ye-Hwang; et al, JOURNAL OF CELL BIOLOGY, v.174, no.6, pp.827 - 838, 2006-09 |
| Plant array chip for the germination and growth screening of Arabidopsis thaliana Park, Youn Hee; Lee, Nayoung; Choi, Giltsu; Park, Je-Kyun, LAB ON A CHIP, v.17, no.18, pp.3071 - 3077, 2017-09 |
| Precritical State Transition Dynamics in the Attractor Landscape of a Molecular Interaction Network Underlying Colorectal Tumorigenesis Chu, Hyunho; Lee, Daewon; Cho, Kwang-Hyun, PLOS ONE, v.10, no.10, 2015-10 |
| Prolonged silencing of diacylglycerol acyltransferase-1 induces a dedifferentiated phenotype in human liver cells Chang, Soyoung; Sung, Pil Soo; Lee, Jungsul; Park, Junseong; Shin, Eui-Cheol; Choi, Chulhee, JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, v.20, no.1, pp.38 - 47, 2016-01 |
| Regulation of the Boundaries of Accessible Chromatin Chai, Xiaoran; Nagarajan, Sanjanaa; Kim, Kwoneel; Lee, Kibaick; Choi, Jung Kyoon, PLOS GENETICS, v.9, no.9, 2013-09 |
| Reuse of imputed data in microarray analysis increases imputation efficiency Kim, KY; Kim, BJ; Yi, Gwan-Su, BMC BIOINFORMATICS, v.5, no.160, pp.3500 - 3507, 2004-10 |
| RNA demethylation by FTO stabilizes the FOXJ1 mRNA for proper motile ciliogenesis Kim, Hyunjoon; Lee, Young-suk; Kim, Seok-Min; Jang, Soohyun; Choi, Hyunji; Lee, Jae-Won; Kim, Tae-Don; et al, DEVELOPMENTAL CELL, v.56, no.8, pp.1118 - +, 2021-04 |
| Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans Sung, Min Kyung; Jang, Juneil; Lee, Kang Seon; Ghim, Cheol-Min; Choi, JungKyoon, GENOME BIOLOGY, v.17, 2016-07 |
| Shared co-expression networks in frontal cortex of the normal aged brain and schizophrenia Kim, Sanghyeon; Jo, Yousang; Webster, Maree J.; Lee, Doheon, SCHIZOPHRENIA RESEARCH, v.204, pp.253 - 261, 2019-02 |
| Single-cell transcriptomic mapping of intestinal epithelium that undergoes 3D morphogenesis and mechanodynamic stimulation in a gut-on-a-chip Shin, Woojung; Su, Zhe; Yi, S. Stephen; Kim, Hyun Jung, ISCIENCE, v.25, no.12, 2022-12 |
| SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms Park, J; Hwang, S; Lee, YS; Kim, SC; Lee, Doheon, NUCLEIC ACIDS RESEARCH, v.35, pp.D711 - D715, 2007-01 |
| The core regulation module of stress-responsive regulatory networks in yeast Kim, Dongsan; Kim, Man-Sun; Cho, Kwang-Hyun, NUCLEIC ACIDS RESEARCH, v.40, no.18, pp.8793 - 8802, 2012-10 |
| The problem of pseudoreplication in neuroscientific studies: is it affecting your analysis? Fiorillo, Christopher D.; Lazic, Stanley E., BMC NEUROSCIENCE, v.11, 2010-01 |
| The SARS-CoV-2 RNA interactome Lee, Sungyul; Lee, Young-suk; Choi, Yeon; Son, Ahyeon; Park, Youngran; Lee, Kyung-Min; Kim, Jeesoo; et al, MOLECULAR CELL, v.81, no.13, pp.2838 - +, 2021-04 |
| Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms Park, Christopher Y.; Krishnan, Arjun; Zhu, Qian; Wong, Aaron K.; Lee, Young-Suk; Troyanskaya, Olga G., BIOINFORMATICS, v.31, no.7, pp.1093 - 1101, 2015-04 |
| Transcriptome sequencing of the choroid plexus in schizophrenia Kim, Sanghyeon; Hwang, Yongdeuk; Lee, Doheon; Webster, Maree J., TRANSLATIONAL PSYCHIATRY, v.6, 2016-11 |
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