DC Field | Value | Language |
---|---|---|
dc.contributor.author | Kim, Woo-Chan | ko |
dc.contributor.author | Lee, Kang-Hoon | ko |
dc.contributor.author | Shin, Kyung-Seop | ko |
dc.contributor.author | You, Ri-Na | ko |
dc.contributor.author | Lee, Young-Kwan | ko |
dc.contributor.author | Cho, Ki-Ho | ko |
dc.contributor.author | Cho, Dong-Ho | ko |
dc.date.accessioned | 2013-03-13T00:42:18Z | - |
dc.date.available | 2013-03-13T00:42:18Z | - |
dc.date.created | 2012-10-16 | - |
dc.date.created | 2012-10-16 | - |
dc.date.issued | 2012-09 | - |
dc.identifier.citation | GENOMICS, v.100, no.3, pp.131 - 140 | - |
dc.identifier.issn | 0888-7543 | - |
dc.identifier.uri | http://hdl.handle.net/10203/104030 | - |
dc.description.abstract | Genes occupy similar to 3% of the human and mouse genomes whereas repetitive elements (REs), whose biologic functions are largely uncharacterized, constitute greater than 50%. A heterogeneous population of RE arrays (arrangement structures) is formed by combinations of various REs in mammalian genomes. In this study. REMiner-II was refined from the original REMiner for a more efficient identification and configuration of RE arrays from large queries (e.g., human chromosomes) using an unbiased self-alignment protocol. Chromosome-wide RE array profiles for the entire sets of human and mouse chromosomes were obtained using REMiner-II on a personal computer. REMiner-II provides 10 adjustable parameters and three data output modes to accommodate different experimental settings and/or goals. Examination of the human and mouse chromosome data using the REMiner-II viewer revealed species-specific libraries of complexly organized RE arrays. In conclusion, REMiner-II is an efficient tool for chromosome-wide identification and characterization of RE arrays from mammalian genomes. (C) 2012 Elsevier Inc. All rights reserved. | - |
dc.language | English | - |
dc.publisher | ACADEMIC PRESS INC ELSEVIER SCIENCE | - |
dc.subject | DNA-SEQUENCES | - |
dc.subject | LTR RETROTRANSPOSONS | - |
dc.subject | HUMAN GENOME | - |
dc.subject | REPEATS | - |
dc.subject | SEARCH | - |
dc.subject | GENERATION | - |
dc.subject | EFFICIENT | - |
dc.subject | PROTEIN | - |
dc.subject | FINDER | - |
dc.subject | BLAST | - |
dc.title | REMiner-II: A tool for rapid identification and configuration of repetitive element arrays from large mammalian chromosomes as a single query | - |
dc.type | Article | - |
dc.identifier.wosid | 000308387700001 | - |
dc.identifier.scopusid | 2-s2.0-84865348559 | - |
dc.type.rims | ART | - |
dc.citation.volume | 100 | - |
dc.citation.issue | 3 | - |
dc.citation.beginningpage | 131 | - |
dc.citation.endingpage | 140 | - |
dc.citation.publicationname | GENOMICS | - |
dc.identifier.doi | 10.1016/j.ygeno.2012.06.006 | - |
dc.embargo.liftdate | 9999-12-31 | - |
dc.embargo.terms | 9999-12-31 | - |
dc.contributor.localauthor | Cho, Dong-Ho | - |
dc.contributor.nonIdAuthor | Lee, Kang-Hoon | - |
dc.contributor.nonIdAuthor | Lee, Young-Kwan | - |
dc.contributor.nonIdAuthor | Cho, Ki-Ho | - |
dc.type.journalArticle | Article | - |
dc.subject.keywordAuthor | Mammalian genome | - |
dc.subject.keywordAuthor | Chromosome-wide | - |
dc.subject.keywordAuthor | Repetitive element | - |
dc.subject.keywordAuthor | RE array | - |
dc.subject.keywordAuthor | Mining | - |
dc.subject.keywordAuthor | REMiner-II | - |
dc.subject.keywordPlus | DNA-SEQUENCES | - |
dc.subject.keywordPlus | LTR RETROTRANSPOSONS | - |
dc.subject.keywordPlus | HUMAN GENOME | - |
dc.subject.keywordPlus | REPEATS | - |
dc.subject.keywordPlus | SEARCH | - |
dc.subject.keywordPlus | GENERATION | - |
dc.subject.keywordPlus | EFFICIENT | - |
dc.subject.keywordPlus | PROTEIN | - |
dc.subject.keywordPlus | FINDER | - |
dc.subject.keywordPlus | BLAST | - |
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