Presented in this paper is a modeling and simulation methodology for 3 dimensional man-made systems. Based on DEVS(discrete event system specification) formalism, we propose GK-DEVS (geometrical and kinematic DEVS) formalism to describe the geometrical and kinematic structure and continuous state dynamics. To represent geometry and kinematics, we add a hierarchical structure to the conventional atomic model. In addition, we employ the "empty event" and its external event function for continuous state changing. In terms of abstract simulation algorithm, the simulation method of GK-DEVS, named GK-Simulator, is proposed for combined discrete-continuous simulation. Using GK-DEVS, the simulation of an FMS(flexible manufacturing system) consisting of a luring machine, a 3-axis machine and a RGV-mounted robot has been peformed.en peformed.